SubtiBank SubtiBank
yizB [2018-09-14 18:28:27]
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yizB [2018-09-14 18:28:27]

similar to transcription regulator ([SW|PadR family])
locus
BSU11079
pI
9.10
mw
13.00 kDa
protein length
115 aa Sequence Blast
gene length
345 bp Sequence Blast
function
unknown
product
unknown
essential
-
synonyms
Outlinks
KEGGBsubCycUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    1,184,657 → 1,185,004

    The protein

    Structure

  • [PDB|4ESB] (from B. cereus, 45% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|A8D69D7507B927D58646BE334BC7DFB81B7224EA|yizB]-[gene|EC3E350118EF2B2F2B8B7763A62253CAB2B72BC9|yitQ]-[gene|C248464E5B6463E253E389587995B9A7F17E1DCC|yitR]
    description
    [pubmed|31622331]
    view in new tab

    Biological materials

    Mutant

  • BKE11079 (Δ[gene|A8D69D7507B927D58646BE334BC7DFB81B7224EA|yizB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE11079 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGGTTTAAATATATCGAA, downstream forward: _UP4_GCCTTACTGTCTTTATCGGG
  • BKK11079 (Δ[gene|A8D69D7507B927D58646BE334BC7DFB81B7224EA|yizB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK11079 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGGTTTAAATATATCGAA, downstream forward: _UP4_GCCTTACTGTCTTTATCGGG